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There is plenty, think of your typical airport concourse, you have displays, booths for people to give information, an assortment of tugs and carts used for moving stuff around. and lots of chairs
To clarify the defensive layout... First barricade: nothing special, just a barricade. Second barricade: the one Takamori doused with fuel and burns. Third: Explosive lined walls that cave in if Takamori detonates. Fourth: Last line of defense between the NMX and the civilians. Are the UOC people in the hangar dealing with the explosives or manning the line with us?
Also, what's the process for upgrading from the Yamataian to the Minkan? Do I just change the wiki page and make some note of it ICly?
Lastly, are there medical books aboard the Aeon for Makoto to study?
As for the upgrade to the Minkan. At the end of the current Mission, your character will be given the opportunity to upgrade, while the ship is at Veronica.