(( I'm going to go ahead and fast-forward a bit here, since Tomi's the only one awake in the med bay now and the other scene is basically ready to move on. ))
Once James was under, Tomi walked to the reconstruction tube, ordering it to begin crafting his upgraded body. That left her with a nice segment of downtime in which to explore and get used to her new lab, but, soon enough, the new body was done and it was back to work. It was time to play musical chairs with bodies.
Two unconscious bodies- one on the ST backup table, one in the reconstruction tube. They needed to swap locations. And of course, Sigurd had gone to unload cargo, leaving her with the task of moving them. Lifting James' unconscious 'old' body carefully- and once again reflecting that she really did miss her old NH17 body's strength from time to time- she carried it to the examination room and flopped it on the table. Then, she took the still dripping-wet 'new' body and placed it on the backup table, beginning the process to write his fresh backup to it.
Finally, the 'old' body went in the tube to be dissolved. Where exactly the raw materials went, she didn't know- and didn't want to know. In the event that something went wrong and they ended up eating hemosynthesized food for a while- well, that stuff was nauseating enough without imagining that old bodies were recycled into it.
Once James' backup was finished, she carried him to the examination room once again, sitting his still-unconscious form on the table and putting his pile of clothing on the desk. Then, finally done with the transfer, she laid down on the ST table and began her own backup- sans unconsciousness. She wasn't big on pain, but with nobody around to wake her up, she wasn't going to run the chance of falling asleep on the table for a few hours.